Plasmid research paper

Functional in many species and can be useful for a diverse set of applications - Plasmids can drive gene expression in a wide variety of organisms, including plants, worms, mice, and even cultured human cells. Although plasmids were originally used to understand protein coding gene function, they are now used for a variety of studies used to investigate promoters, small RNAs, or other genetic elements.

Plasmids are versitile and can be used in many different ways by scientists. The combination of elements often determines the type of plasmid and dictates how it might be used in the lab.

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Below are some common plasmid types:. Cloning vectors tend to be very simple, often containing only a bacterial resistance gene, origin of replication, and MCS. They are small and optimized to help in the initial cloning of a DNA fragment. If you are looking for an empty plasmid backbone for your experiment, see Addgene's empty backbone page for more information. Expression Plasmids - Used for gene expression for the purposes of gene study.

Expression vectors must contain a promoter sequence, a transcription terminator sequence, and the inserted gene. The terminator sequence on the newly synthesized RNA signals for the transcription process to stop.

An expression vector can also include an enhancer sequence which increases the amount of protein or RNA produced. Expression vectors can drive expression in various cell types mammalian, yeast, bacterial, etc. Gene Knock-down Plasmids - Used for reducing the expression of an endogenous gene.

These plasmids have promoters that can drive expression of short RNAs. Genome Engineering Plasmids - Used to target and edit genomes. Reporter Plasmids - Used for studying the function of genetic elements.

Definition

These plasmids contain a reporter gene for example, luciferase or GFP that offers a read-out of the activity of the genetic element. For instance, a promoter of interest could be inserted upstream of the luciferase gene to determine the level of transcription driven by that promoter. Viral Plasmids - These plasmids are modified viral genomes that are used to efficiently deliver genetic material into target cells.

What Are Plasmids? In The Biology Research Lab

You can use these plasmids to create viral particles, such as lentiviral, retroviral, AAV, or adenoviral particles, that can infect your target cells at a high efficiency. Addgene's expanding viral service offers select ready-made AAV and lentiviral particles. Visit our viral service page to learn more. Regardless of type, plasmids are generally propagated, selected for, and the integrity verified prior to use in an experiment.

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Plasmids Research Papers - firatiponta.ga

There are many different naturally occurring strains of E. The majority of all common, commercial lab strains of E. We've included a small number of E. Many plasmids are designed to include an antibiotic resistance gene, which when expressed, allows only plasmid-containing bacteria to grow in or on media containing that antibiotic. These antibiotic resistance genes not only give the scientist with an easy way to detect plasmid-containing bacteria, but also provide those bacteria with a pressure to maintain and replicate your plasmid over multiple generations.

More information relating to antibiotic resistance genes as well as additional antibiotics not listed in the table below can be found in this blog post. Below you will find a few antibiotics commonly used in the lab and their recommended concentrations. We suggest checking your plasmid's datasheet or the plasmid map to confirm which antibiotic s to add to your LB media or LB agar plates.

Create a stock solution of your antibiotic. Unless otherwise indicated, the antibiotic powder can be dissolved in dH 2 0.

To use, dilute your antibiotic into your LB medium at , DNA is made up of 4 bases, adenine, thymine , cytosine, and guanine. The order of these bases makes up the genetic code and provides all the information needed for cells to make proteins and other molecules essential for life. Sequencing DNA and understanding the genetic code allows scientists to study gene function as well as identify changes or mutations that may cause certain diseases.

Sequencing DNA is extremely important when verifying plasmids to ensure each plasmid contains the essential elements to function and the correct gene of interest. So how do scientists sequence DNA? In , Frederick Sanger developed the process termed Sanger sequencing, sometimes referred to as chain-termination sequencing or dideoxy sequencing.

To understand Sanger sequencing, we first need to understand DNA replication. DNA is a double helix, where a base on one strand pairs with a particular base on the other, complementary, strand. Specifically, A pairs with T and C pairs with G. During replication, DNA unwinds and the DNA polymerase enzyme binds to and migrates down the single stranded DNA adding nucleotides according to the sequence of the complementary strand. The replication process can also be done in a test tube to copy DNA regions of interest. Thus to replicate a piece of DNA in vitro one has to know some of its sequence to design a effective primer.

Sanger sequencing is modeled after in vitro DNA replication but relies on the random incorporation of modified, fluorescently tagged bases onto the growing DNA strand in addition to the normal A, T, C, or G nucleotide. The 4 standard bases are tagged with a different fluorophore so they can be distinguished from one another. The major difference in this process occurs when the polymerase incorporates a fluorescently tagged nucleotide. Many plasmids, for example, carry genes that code for the production of enzymes to inactivate antibiotics or poisons.

Others contain genes that help a host organism digest unusual substances or kill other types of bacteria. Several characteristics of plasmids make them easy to modify genetically. Secondly, they are easy to cut open, without falling apart, and snap back into shape. This makes it easy to insert new DNA into plasmids. Once a new DNA is inserted, the modified plasmid can be grown in bacteria for self-replication to make endless copies. The ease of manipulation and reproduction of plasmids, as well as their long-term stability, has made them indispensable tools in genetics and biotechnology laboratories.

One of their most important functions is as a delivery vehicle, or vector, to introduce foreign DNA into bacteria, a fundamental step for genetic engineering and many other biotechnology applications. Facebook Twitter Donate to WiB.

Researchers Discover New Ways Plasmids Work to Make Bacteria More Resistant

Plasmid Definition A plasmid is a small double-stranded unit of DNA, usually circular but sometimes linear, that exists independent of the chromosome and is capable of self-replication. Date Event People Places Datta was a microbial geneticist who showed that multi-antibiotic resistance was transferred between bacteria by plasmids. She first made the connection in after investigating a severe outbreak of Salmonella typhimurium phage-type 27 at Hammersmith Hospital where she worked.

This involved an examination of cultures, of which she found 25 were drug resistant, eight of which were resistant to Streptomycin which had been used to treat the patients. She concluded that the antibiotic resistance developed over time because the earlier cultures of the salmonella typhimurium infection from the start of the outbreak were not drug resistant. This was based on some experiments he performed with Edward Tatum in which involved mixing two different strains of bacteria.

Their experiments also demonstrated for the first time that bacteria reproduced sexually, rather than by cells splitting in two, thereby proving that bacterial genetic systems were similar to those of multicelluar organisms. Later on, in , working with Norton Zinder, Lederberg found that certain bacteriophages viruses that affect bacteria could carry a bacterial gene from one bacterium to another.

In Lederberg shared the Nobel Prize for Medicine for 'discoveries concerning genetic recombination and the organisation of the genetic material of bacteria. During the s he demonstrated that bacteria could acquire resistance by swapping genetic material via plasmids, small microbial DNA molecules. Thereafter he focused his attention on how pathogens cause disease and in helped to identify a single genetic locus in Yersinia pseudotuberculosis, a Gram-negative bacteria, that accounts for its ability to infect cultured animal cells.

He later showed that a sub-type of E. Known as the founder of molecular pathogenesis, Falkow's work paved the way to the development of new vaccines, including for whooping cough. A second UPS-related method allows for the precise transfer of coding sequences only from the univector into a host vector.

The UPS eliminates the need for restriction enzymes, DNA ligases and many in vitro manipulations required for subcloning, and allows for the rapid construction of multiple constructs for expression in multiple organisms. We demonstrate that UPS can also be used to transfer whole libraries into new vectors. Conclusions: Together, these recombination-based cloning methods constitute a new comprehensive approach for the rapid and efficient generation of recombinant DNA that can be used for parallel processing of large gene sets, a feature that will facilitate future genomic analysis.